Feature identity
- Identifier
- PaHa03g04840.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 264 bp
- Genomic location
- 3:9,599,854–9,603,444
- Strand
- −
Hass · mRNA
PaHa03g04840.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 264
- bp
- 3:9,599,854–9,603,444
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g04840
- eggNOG
- Preferred name: LOC107766041 | Seed ortholog: 542762.A0A4V3WMP2 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Z-8, Myb_CC_LHEQLE@33090|S-7, Myb_CC_LHEQLE@3398|i-9, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|BXZ-32, Myb_DNA-binding@33090|Apr-30
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0006355 regulation of DNA-templated transcription; GO:2000762 regulation of phenylpropanoid metabolic process
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g04840.1-protein
derives_frommRNAPaHa03g04840.1
mRNAPaHa03g04840.1
part_ofgenePaHa03g04840
CDS
part_ofPaHa03g04840.1-CDS-3-1787993825:9599854..9599892mRNAPaHa03g04840.1
CDS
part_ofPaHa03g04840.1-CDS-3-1787993825:9600304..9600380mRNAPaHa03g04840.1
CDS
part_ofPaHa03g04840.1-CDS-3-1787993825:9602946..9603016mRNAPaHa03g04840.1
CDS
part_ofPaHa03g04840.1-CDS-3-1787993825:9603368..9603444mRNAPaHa03g04840.1
exon
part_ofPaHa03g04840.1-exon-3-1787993825:9599854..9599892mRNAPaHa03g04840.1
exon
part_ofPaHa03g04840.1-exon-3-1787993825:9600304..9600380mRNAPaHa03g04840.1
exon
part_ofPaHa03g04840.1-exon-3-1787993825:9602946..9603016mRNAPaHa03g04840.1
exon
part_ofPaHa03g04840.1-exon-3-1787993825:9603368..9603444mRNAPaHa03g04840.1
