Hass · gene

PaHa03g39740

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,949
bp
3:95,152,110–95,174,921
genomic location
Record overview

Feature identity

Identifier
PaHa03g39740
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,949 bp
Genomic location
3:95,152,110–95,174,921
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: EDR1 | Seed ortholog: 337451.A0A443NHU7 | COG: S | eggNOG OG: EDR1@131567|A-1, EDR1@35493|Cn-13, EDR1@58023|FC-16, PK_Tyr_Ser-Thr@131567|Cjv-26, PK_Tyr_Ser-Thr@2759|DJm-27, PK_Tyr_Ser-Thr@33090|dBI-47
Gene Ontology
GO:0000077 DNA damage checkpoint signaling; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000287 magnesium ion binding; GO:0001666 response to hypoxia; GO:0001845 phagolysosome assembly; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0004672 protein kinase activity; GO:0004674 protein serine/threonine kinase activity; GO:0004706 JUN kinase kinase kinase activity; GO:0004709 MAP kinase kinase kinase activity; GO:0004712 protein serine/threonine/tyrosine kinase activity; GO:0004713 protein tyrosine kinase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005789 endoplasmic reticulum membrane; GO:0005813 centrosome; GO:0005829 cytosol; GO:0005874 microtubule; GO:0005938 cell cortex; GO:0006413 translational initiation; GO:0006468 protein phosphorylation; GO:0006909 phagocytosis; GO:0006915 apoptotic process; GO:0006935 chemotaxis; GO:0006954 inflammatory response; GO:0007010 cytoskeleton organization; GO:0007017 microtubule-based process; GO:0007224 smoothened signaling pathway; GO:0007254 JNK cascade; GO:0008219 cell death; GO:0009686 gibberellin biosynthetic process; GO:0009723 response to ethylene; GO:0009744 response to sucrose; GO:0009749 response to glucose; GO:0009750 response to fructose; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009968 negative regulation of signal transduction; GO:0010105 negative regulation of ethylene-activated signaling pathway; GO:0010182 sugar mediated signaling pathway; GO:0010231 maintenance of seed dormancy; GO:0016020 membrane; GO:0018105 peptidyl-serine phosphorylation; GO:0018107 peptidyl-threonine phosphorylation; GO:0019887 protein kinase regulator activity; GO:0030036 actin cytoskeleton organization; GO:0030154 cell differentiation; GO:0030295 protein kinase activator activity; GO:0030670 phagocytic vesicle membrane; GO:0031098 stress-activated protein kinase signaling cascade; GO:0031267 small GTPase binding; GO:0031434 mitogen-activated protein kinase kinase binding; GO:0031435 mitogen-activated protein kinase kinase kinase binding; GO:0032010 phagolysosome; GO:0034451 centriolar satellite; GO:0035556 intracellular signal transduction; GO:0038066 p38MAPK cascade; GO:0042733 embryonic digit morphogenesis; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043022 ribosome binding; GO:0043065 positive regulation of apoptotic process; GO:0043068 positive regulation of programmed cell death; GO:0043425 bHLH transcription factor binding; GO:0043507 positive regulation of JUN kinase activity; GO:0043525 positive regulation of neuron apoptotic process; GO:0044843 cell cycle G1/S phase transition; GO:0045892 negative regulation of DNA-templated transcription; GO:0046330 positive regulation of JNK cascade; GO:0046777 protein autophosphorylation; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0050765 negative regulation of phagocytosis; GO:0050829 defense response to Gram-negative bacterium; GO:0051403 stress-activated MAPK cascade; GO:0051593 response to folic acid; GO:0051604 protein maturation; GO:0060173 limb development; GO:0070181 small ribosomal subunit rRNA binding; GO:0070269 pyroptotic inflammatory response; GO:0070303 negative regulation of stress-activated protein kinase signaling cascade; GO:0071480 cellular response to gamma radiation; GO:0071493 cellular response to UV-B; GO:0090332 stomatal closure; GO:0097677 STAT family protein binding; GO:0097696 cell surface receptor signaling pathway via STAT; GO:0106310 protein serine kinase activity; GO:0140469 GCN2-mediated signaling; GO:0170011 stalled ribosome sensor activity; GO:1902010 negative regulation of translation in response to endoplasmic reticulum stress; GO:1904291 positive regulation of mitotic DNA damage checkpoint; GO:1904784 NLRP1 inflammasome complex assembly; GO:2000035 regulation of stem cell division; GO:2000069 regulation of post-embryonic root development; GO:2000146 negative regulation of cell motility
KEGG
EC: ec:2.7.11.25 | KO: K04424 | Pathway: 04016, 04075 | BRITE: 00001, 01000, 01001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.