Hass · gene

PaHa03g40900

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,275
bp
3:96,642,748–96,652,371
genomic location
Record overview

Feature identity

Identifier
PaHa03g40900
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,275 bp
Genomic location
3:96,642,748–96,652,371
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109007874 | Seed ortholog: 337451.A0A443NHY6 | COG: S | eggNOG OG: LRR_8@131221|AHF-26, LRR_8@131567|bG-22, LRR_8@3398|KwO-39, Malectin_like@131221|Bo-10, Malectin_like@131567|A-1*, Malectin_like@3398|MI-15, PK_Tyr_Ser-Thr@131221|IFt-34, PK_Tyr_Ser-Thr@131567|TO-14, PK_Tyr_Ser-Thr@1437183|cRo-46, PK_Tyr_Ser-Thr@3398|VZv-43, PK_Tyr_Ser-Thr@35493|FsQ-31
Gene Ontology
GO:0000302 response to reactive oxygen species; GO:0001525 angiogenesis; GO:0002040 sprouting angiogenesis; GO:0002221 pattern recognition receptor signaling pathway; GO:0002224 toll-like receptor signaling pathway; GO:0002229 defense response to oomycetes; GO:0002237 response to molecule of bacterial origin; GO:0002238 response to molecule of fungal origin; GO:0002446 neutrophil mediated immunity; GO:0002752 cell surface pattern recognition receptor signaling pathway; GO:0002755 MyD88-dependent toll-like receptor signaling pathway; GO:0002758 innate immune response-activating signaling pathway; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0006468 protein phosphorylation; GO:0006952 defense response; GO:0006968 cellular defense response; GO:0006970 response to osmotic stress; GO:0006979 response to oxidative stress; GO:0007165 signal transduction; GO:0007166 cell surface receptor signaling pathway; GO:0007172 signal complex assembly; GO:0007186 G protein-coupled receptor signaling pathway; GO:0007249 canonical NF-kappaB signal transduction; GO:0007417 central nervous system development; GO:0007623 circadian rhythm; GO:0007639 homeostasis of number of meristem cells; GO:0008150 biological_process; GO:0009101 glycoprotein biosynthetic process; GO:0009266 response to temperature stimulus; GO:0009311 oligosaccharide metabolic process; GO:0009409 response to cold; GO:0009555 pollen development; GO:0009556 microsporogenesis; GO:0009609 response to symbiotic bacterium; GO:0009611 response to wounding; GO:0009615 response to virus; GO:0009617 response to bacterium; GO:0009620 response to fungus; GO:0009625 response to insect; GO:0009626 plant-type hypersensitive response; GO:0009651 response to salt stress; GO:0009723 response to ethylene; GO:0009733 response to auxin; GO:0009737 response to abscisic acid; GO:0009738 abscisic acid-activated signaling pathway; GO:0009741 response to brassinosteroid; GO:0009742 brassinosteroid mediated signaling pathway; GO:0009751 response to salicylic acid; GO:0009788 negative regulation of abscisic acid-activated signaling pathway; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009791 post-embryonic development; GO:0009793 embryo development ending in seed dormancy; GO:0009826 unidimensional cell growth; GO:0009838 abscission; GO:0009860 pollen tube growth; GO:0009861 jasmonic acid and ethylene-dependent systemic resistance; GO:0009877 nodulation; GO:0009934 regulation of meristem structural organization; GO:0009960 endosperm development; GO:0009992 intracellular water homeostasis; GO:0010038 response to metal ion; GO:0010068 protoderm histogenesis; GO:0010073 meristem maintenance; GO:0010074 maintenance of meristem identity; GO:0010075 regulation of meristem growth; GO:0010078 maintenance of root meristem identity; GO:0010080 regulation of floral meristem growth; GO:0010082 regulation of root meristem growth; GO:0010088 phloem development; GO:0010098 suspensor development; GO:0010118 stomatal movement; GO:0010119 regulation of stomatal movement; GO:0010150 leaf senescence; GO:0010152 pollen maturation; GO:0010183 pollen tube guidance; GO:0010200 response to chitin; GO:0010234 anther wall tapetum cell fate specification; GO:0010375 stomatal complex patterning; GO:0010449 root meristem growth; GO:0010483 pollen tube reception; GO:0010492 maintenance of shoot apical meristem identity; GO:0010595 positive regulation of endothelial cell migration; GO:0010600 regulation of auxin biosynthetic process; GO:0012501 programmed cell death; GO:0016567 protein ubiquitination; GO:0030154 cell differentiation; GO:0030308 negative regulation of cell growth; GO:0031347 regulation of defense response; GO:0031348 negative regulation of defense response; GO:0031663 lipopolysaccharide-mediated signaling pathway; GO:0031667 response to nutrient levels; GO:0032491 detection of molecule of fungal origin; GO:0032497 detection of lipopolysaccharide; GO:0032499 detection of peptidoglycan; GO:0032502 developmental process; GO:0032922 circadian regulation of gene expression; GO:0034142 toll-like receptor 4 signaling pathway; GO:0034162 toll-like receptor 9 signaling pathway; GO:0035556 intracellular signal transduction; GO:0036289 peptidyl-serine autophosphorylation; GO:0038172 interleukin-33-mediated signaling pathway; GO:0042542 response to hydrogen peroxide; GO:0042631 cellular response to water deprivation; GO:0042742 defense response to bacterium; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043405 regulation of MAP kinase activity; GO:0043542 endothelial cell migration; GO:0044546 NLRP3 inflammasome complex assembly; GO:0045087 innate immune response; GO:0045088 regulation of innate immune response; GO:0045765 regulation of angiogenesis; GO:0045851 pH reduction; GO:0045893 positive regulation of DNA-templated transcription; GO:0046777 protein autophosphorylation; GO:0048229 gametophyte development; GO:0048364 root development; GO:0048437 floral organ development; GO:0048439 flower morphogenesis; GO:0048527 lateral root development; GO:0048573 photoperiodism, flowering; GO:0048653 anther development; GO:0048765 root hair cell differentiation; GO:0048768 root hair cell tip growth; GO:0048833 specification of floral organ number; GO:0050777 negative regulation of immune response; GO:0050832 defense response to fungus; GO:0050920 regulation of chemotaxis; GO:0051302 regulation of cell division; GO:0051924 regulation of calcium ion transport; GO:0052542 defense response by callose deposition; GO:0052543 callose deposition in cell wall; GO:0060070 canonical Wnt signaling pathway; GO:0060586 multicellular organismal-level iron ion homeostasis; GO:0060862 negative regulation of floral organ abscission; GO:0062207 regulation of pattern recognition receptor signaling pathway; GO:0070498 interleukin-1-mediated signaling pathway; GO:0071215 cellular response to abscisic acid stimulus; GO:0071219 cellular response to molecule of bacterial origin; GO:0071323 cellular response to chitin; GO:0071446 cellular response to salicylic acid stimulus; GO:0071456 cellular response to hypoxia; GO:0080092 regulation of pollen tube growth; GO:0080136 priming of cellular response to stress; GO:0080141 regulation of jasmonic acid biosynthetic process; GO:0080142 regulation of salicylic acid biosynthetic process; GO:0080147 root hair cell development; GO:0080159 zygote elongation; GO:0090210 regulation of establishment of blood-brain barrier; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0090511 periclinal cell division; GO:0090558 plant epidermis development; GO:0090627 plant epidermal cell differentiation; GO:0097275 intracellular ammonium homeostasis; GO:0099402 plant organ development; GO:0140301 pollen-stigma interaction; GO:1900150 regulation of defense response to fungus; GO:1900424 regulation of defense response to bacterium; GO:1900425 negative regulation of defense response to bacterium; GO:1900426 positive regulation of defense response to bacterium; GO:1900459 positive regulation of brassinosteroid mediated signaling pathway; GO:1900747 negative regulation of vascular endothelial growth factor signaling pathway; GO:1901141 regulation of lignin biosynthetic process; GO:1901653 cellular response to peptide; GO:1902290 positive regulation of defense response to oomycetes; GO:1902458 positive regulation of stomatal opening; GO:1902533 positive regulation of intracellular signal transduction; GO:1902584 positive regulation of response to water deprivation; GO:1903428 positive regulation of reactive oxygen species biosynthetic process; GO:1905393 plant organ formation; GO:1990266 neutrophil migration; GO:2000037 regulation of stomatal complex patterning; GO:2000038 regulation of stomatal complex development; GO:2000280 regulation of root development
KEGG
EC: ec:2.3.1.51, ec:2.7.10.1, ec:2.7.10.2, ec:2.7.11.1, ec:3.1.4.4 | KO: K00924, K01115, K04249, K04730, K04731, K04732, K04733, K05391, K06850, K08460, K08461, K08462, K08885, K13415, K13416, K13418, K13420, K13429, K13430, K13435, K13436, K13517, K14500, K27589, K27626 | Pathway: 00561, 00564, 00565, 01100, 01110, 04010, 04016, 04064, 04075, 04080, 04144, 04620, 04621, 04624, 04626, 04722, 04936, 05132, 05133, 05135, 05140, 05142, 05145, 05152, 05161, 05162, 05164, 05168, 05169, 05170, 05171, 05417 | Module: M00089 | BRITE: 00001, 00536, 01000, 01001, 01002, 01004, 04030, 04040, 04131 | CAZy: CBM57|Carbohydrate-Binding Module Family 57.
Biological context

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