Hass · mRNA

PaHa01g09100.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

804
bp
1:13,227,589–13,238,767
genomic location
Record overview

Feature identity

Identifier
PaHa01g09100.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
804 bp
Genomic location
1:13,227,589–13,238,767
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107904967 | Seed ortholog: 337451.A0A3S3Q5M0 | COG: S | eggNOG OG: TFIIF_beta@1437183|JM-13, TFIIF_beta@2759|A-1, TFIIF_beta_N@1437183|Gs-14, TFIIF_beta_N@2759|A-1
Gene Ontology
GO:0000993 RNA polymerase II complex binding; GO:0001096 TFIIF-class transcription factor complex binding; GO:0001174 transcriptional start site selection at RNA polymerase II promoter; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005674 transcription factor TFIIF complex; GO:0005675 transcription factor TFIIH holo complex; GO:0006355 regulation of DNA-templated transcription; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0008150 biological_process; GO:0015630 microtubule cytoskeleton; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051123 RNA polymerase II preinitiation complex assembly
KEGG
KO: K03139 | Pathway: 03022 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g09100.1-CDS-1-1787993825:13227589..13227647
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13227744..13227781
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13227873..13227901
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13230240..13230389
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13230792..13230866
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13230958..13231088
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13234831..13234939
part_of
CDSPaHa01g09100.1-CDS-1-1787993825:13238555..13238767
part_of
exonPaHa01g09100.1-exon-1-1787993825:13227589..13227647
part_of
exonPaHa01g09100.1-exon-1-1787993825:13227744..13227781
part_of
exonPaHa01g09100.1-exon-1-1787993825:13227873..13227901
part_of
exonPaHa01g09100.1-exon-1-1787993825:13230240..13230389
part_of
exonPaHa01g09100.1-exon-1-1787993825:13230792..13230866
part_of
exonPaHa01g09100.1-exon-1-1787993825:13230958..13231088
part_of
exonPaHa01g09100.1-exon-1-1787993825:13234831..13234939
part_of
exonPaHa01g09100.1-exon-1-1787993825:13238555..13238767
part_of