Hass · mRNA

PaHa01g09200.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

999
bp
1:13,462,267–13,463,891
genomic location
Record overview

Feature identity

Identifier
PaHa01g09200.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
999 bp
Genomic location
1:13,462,267–13,463,891
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: SRS1 | Seed ortholog: 337451.A0A3S3N1R6 | COG: S | eggNOG OG: DUF702@131221|a-5, DUF702@131567|A-1*, DUF702@2759|C-2, DUF702@3398|Au-8
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009555 pollen development; GO:0009739 response to gibberellin; GO:0009740 gibberellic acid mediated signaling pathway; GO:0009938 negative regulation of gibberellic acid mediated signaling pathway; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0046982 protein heterodimerization activity; GO:0048450 floral organ structural organization; GO:0048653 anther development
KEGG
EC: ec:1.3.1.88 | KO: K27807 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g09200.1-CDS-1-1787993825:13462267..13462334
part_of
CDSPaHa01g09200.1-CDS-1-1787993825:13462841..13463194
part_of
CDSPaHa01g09200.1-CDS-1-1787993825:13463315..13463891
part_of
exonPaHa01g09200.1-exon-1-1787993825:13462267..13462334
part_of
exonPaHa01g09200.1-exon-1-1787993825:13462841..13463194
part_of
exonPaHa01g09200.1-exon-1-1787993825:13463315..13463891
part_of