Hass · mRNA

PaHa03g09920.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,007
bp
3:19,620,547–19,690,363
genomic location
Record overview

Feature identity

Identifier
PaHa03g09920.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
5,007 bp
Genomic location
3:19,620,547–19,690,363
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: NRPA1 | Seed ortholog: 337451.A0A443NBT7 | COG: COG0086 | eggNOG OG: RNA_pol_Rpb1_2@131567|A-1, RNA_pol_Rpb1_3@131567|A-1, RNA_pol_Rpb1_4@131567|A-1, RNA_pol_Rpb1_5@131567|A-1
Gene Ontology
GO:0000287 magnesium ion binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0003899 DNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006362 transcription elongation by RNA polymerase I; GO:0006363 termination of RNA polymerase I transcription; GO:0006366 transcription by RNA polymerase II; GO:0008270 zinc ion binding; GO:0008340 determination of adult lifespan; GO:0009303 rRNA transcription; GO:0009506 plasmodesma; GO:0034062 5'-3' RNA polymerase activity; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0071667 DNA/RNA hybrid binding; GO:1904750 negative regulation of protein localization to nucleolus; GO:1990841 promoter-specific chromatin binding
KEGG
EC: ec:2.7.7.6 | KO: K02999 | Pathway: 03020 | BRITE: 00001, 01000, 01611, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g09920.1-CDS-3-1787993825:19620547..19620579
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CDSPaHa03g09920.1-CDS-3-1787993825:19620691..19620860
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CDSPaHa03g09920.1-CDS-3-1787993825:19621127..19621286
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CDSPaHa03g09920.1-CDS-3-1787993825:19623003..19623299
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19634918..19635208
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19635674..19635853
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19640485..19640647
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19643084..19643271
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19644271..19644534
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19648269..19648357
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19648474..19648621
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19648864..19649082
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19649268..19649534
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19651184..19651325
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19659684..19659889
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19677302..19677504
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19680940..19681138
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19681227..19681507
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19684193..19684333
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19686270..19687104
part_of
CDSPaHa03g09920.1-CDS-3-1787993825:19689833..19690363
part_of
exonPaHa03g09920.1-exon-3-1787993825:19620547..19620579
part_of
exonPaHa03g09920.1-exon-3-1787993825:19620691..19620860
part_of
exonPaHa03g09920.1-exon-3-1787993825:19621127..19621286
part_of
exonPaHa03g09920.1-exon-3-1787993825:19623003..19623299
part_of
exonPaHa03g09920.1-exon-3-1787993825:19634918..19635208
part_of
exonPaHa03g09920.1-exon-3-1787993825:19635674..19635853
part_of
exonPaHa03g09920.1-exon-3-1787993825:19640485..19640647
part_of
exonPaHa03g09920.1-exon-3-1787993825:19643084..19643271
part_of
exonPaHa03g09920.1-exon-3-1787993825:19644271..19644534
part_of
exonPaHa03g09920.1-exon-3-1787993825:19648269..19648357
part_of
exonPaHa03g09920.1-exon-3-1787993825:19648474..19648621
part_of
exonPaHa03g09920.1-exon-3-1787993825:19648864..19649082
part_of
exonPaHa03g09920.1-exon-3-1787993825:19649268..19649534
part_of
exonPaHa03g09920.1-exon-3-1787993825:19651184..19651325
part_of
exonPaHa03g09920.1-exon-3-1787993825:19659684..19659889
part_of
exonPaHa03g09920.1-exon-3-1787993825:19677302..19677504
part_of
exonPaHa03g09920.1-exon-3-1787993825:19680940..19681138
part_of
exonPaHa03g09920.1-exon-3-1787993825:19681227..19681507
part_of
exonPaHa03g09920.1-exon-3-1787993825:19684193..19684333
part_of
exonPaHa03g09920.1-exon-3-1787993825:19686270..19687104
part_of
exonPaHa03g09920.1-exon-3-1787993825:19689833..19690363
part_of