Hass · gene

PaHa_c225g00020

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,208
bp
unplaced_contig_225:2,094–4,809
genomic location
Record overview

Feature identity

Identifier
PaHa_c225g00020
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,208 bp
Genomic location
unplaced_contig_225:2,094–4,809
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: BDF1 | Seed ortholog: 1507870.A0A1V8TNG3 | COG: S | eggNOG OG: BET@131567|A-1*, BET@2759|C-2, Bromodomain@131567|d-5, Bromodomain@2759|DH-9
Gene Ontology
GO:0000785 chromatin; GO:0000812 Swr1 complex; GO:0001046 core promoter sequence-specific DNA binding; GO:0001094 TFIID-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006281 DNA repair; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0009301 snRNA transcription; GO:0031452 negative regulation of heterochromatin formation; GO:0033696 heterochromatin boundary formation; GO:0042393 histone binding; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0071944 cell periphery; GO:0090054 regulation of silent mating-type cassette heterochromatin formation; GO:0140006 histone H3 reader activity; GO:0140008 histone H4 reader activity; GO:0140129 histone H3K56ac reader activity; GO:0140463 chromatin-protein adaptor activity; GO:0140566 histone reader activity; GO:0140861 DNA repair-dependent chromatin remodeling; GO:1905168 positive regulation of double-strand break repair via homologous recombination
KEGG
EC: ec:2.5.1.84, ec:2.5.1.85, ec:3.1.3.16, ec:5.4.99.27 | KO: K11684, K24752 | Pathway: 00900, 01110, 03050, 03082, 04980 | BRITE: 00001, 03036, 03400, 04121
Biological context

Connected feature records

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