Feature identity
- Identifier
- PaHa_c225g00020.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,208 bp
- Genomic location
- unplaced_contig_225:2,094–4,809
- Strand
- +
Hass · mRNA
PaHa_c225g00020.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,208
- bp
- unplaced_contig_225:2,094–4,809
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c225g00020
- eggNOG
- Preferred name: BDF1 | Seed ortholog: 1507870.A0A1V8TNG3 | COG: S | eggNOG OG: BET@131567|A-1*, BET@2759|C-2, Bromodomain@131567|d-5, Bromodomain@2759|DH-9
- Gene Ontology
- GO:0000785 chromatin; GO:0000812 Swr1 complex; GO:0001046 core promoter sequence-specific DNA binding; GO:0001094 TFIID-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006281 DNA repair; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0009301 snRNA transcription; GO:0031452 negative regulation of heterochromatin formation; GO:0033696 heterochromatin boundary formation; GO:0042393 histone binding; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0071944 cell periphery; GO:0090054 regulation of silent mating-type cassette heterochromatin formation; GO:0140006 histone H3 reader activity; GO:0140008 histone H4 reader activity; GO:0140129 histone H3K56ac reader activity; GO:0140463 chromatin-protein adaptor activity; GO:0140566 histone reader activity; GO:0140861 DNA repair-dependent chromatin remodeling; GO:1905168 positive regulation of double-strand break repair via homologous recombination
- KEGG
- EC: ec:2.5.1.84, ec:2.5.1.85, ec:3.1.3.16, ec:5.4.99.27 | KO: K11684, K24752 | Pathway: 00900, 01110, 03050, 03082, 04980 | BRITE: 00001, 03036, 03400, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c225g00020.1-protein
derives_fromgenePaHa_c225g00020
CDS
part_ofPaHa_c225g00020.1-CDS-unplaced_contig_225-1787993825:2094..2194CDS
part_ofPaHa_c225g00020.1-CDS-unplaced_contig_225-1787993825:2599..3364CDS
part_ofPaHa_c225g00020.1-CDS-unplaced_contig_225-1787993825:3469..4809exon
part_ofPaHa_c225g00020.1-exon-unplaced_contig_225-1787993825:2094..2194exon
part_ofPaHa_c225g00020.1-exon-unplaced_contig_225-1787993825:2599..3364exon
part_ofPaHa_c225g00020.1-exon-unplaced_contig_225-1787993825:3469..4809