Feature identity
- Identifier
- Pa01g2189
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 93,934 bp
- Genomic location
- Pa01:40,278,696–40,372,629
- Strand
- −
West Indian T2T · gene
Pa01g2189
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 93,934
- bp
- Pa01:40,278,696–40,372,629
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: SYN2 | Seed ortholog: 4432.A0A1U7Z8W5 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|Vq-22, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NV-16, Rad21_Rec8_N@3398|SD-18
- Gene Ontology
- GO:0000278 mitotic cell cycle; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa01g2189.1
part_ofgenePa01g2189
mRNAPa01g2189.2
part_ofgenePa01g2189
