Pa01g2189.2

West Indian T2T · mRNA

Pa01g2189.2

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,572
bp
Pa01:40,278,696–40,372,629
genomic location
Record overview

Feature identity

Identifier
Pa01g2189.2
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,572 bp
Genomic location
Pa01:40,278,696–40,372,629
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: Pa01g2189

eggNOG
Preferred name: SYN2 | Seed ortholog: 4432.A0A1U7Z8W5 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|Vq-22, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NV-16, Rad21_Rec8_N@3398|SD-18
Gene Ontology
GO:0000278 mitotic cell cycle; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
KEGG
KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

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