Hass · mRNA

PaHa09g16900.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,978
bp
9:44,917,829–44,964,426
genomic location
Record overview

Feature identity

Identifier
PaHa09g16900.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,978 bp
Genomic location
9:44,917,829–44,964,426
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ESP4 | Seed ortholog: 337451.A0A443PXV9 | COG: S | eggNOG OG: SYMPK_PTA1_N@2759|A-1, SYMPK_PTA1_N@3398|Gn-13, Symplekin_C@2759|A-1, Symplekin_C@3398|Io-19
Gene Ontology
GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005849 mRNA cleavage factor complex; GO:0005886 plasma membrane; GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage; GO:0008033 tRNA processing; GO:0008150 biological_process; GO:0009410 response to xenobiotic stimulus; GO:0016604 nuclear body; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0031124 mRNA 3'-end processing; GO:0032091 negative regulation of protein binding; GO:0035363 histone locus body; GO:0061689 tricellular tight junction; GO:0070161 anchoring junction; GO:0071045 nuclear histone mRNA catabolic process; GO:0097165 nuclear stress granule; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
KEGG
KO: K06100 | Pathway: 03015 | BRITE: 00001, 03019, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g16900.1-CDS-9-1787993825:44917829..44917970
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44918054..44918157
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44921128..44921211
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44921342..44921386
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44922485..44922556
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44922681..44922761
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44922846..44922941
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44924796..44924870
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44926386..44926433
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44926533..44926616
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44926707..44926814
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44926931..44926993
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44927157..44927324
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44929472..44929612
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44929696..44929743
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44934565..44934810
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44934903..44935019
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44940202..44940270
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44940720..44941331
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44941667..44942236
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44942394..44942474
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44943716..44943890
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44945965..44946133
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44946391..44946502
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44946604..44946696
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44956806..44956965
part_of
CDSPaHa09g16900.1-CDS-9-1787993825:44964212..44964426
part_of
exonPaHa09g16900.1-exon-9-1787993825:44917829..44917970
part_of
exonPaHa09g16900.1-exon-9-1787993825:44918054..44918157
part_of
exonPaHa09g16900.1-exon-9-1787993825:44921128..44921211
part_of
exonPaHa09g16900.1-exon-9-1787993825:44921342..44921386
part_of
exonPaHa09g16900.1-exon-9-1787993825:44922485..44922556
part_of
exonPaHa09g16900.1-exon-9-1787993825:44922681..44922761
part_of
exonPaHa09g16900.1-exon-9-1787993825:44922846..44922941
part_of
exonPaHa09g16900.1-exon-9-1787993825:44924796..44924870
part_of
exonPaHa09g16900.1-exon-9-1787993825:44926386..44926433
part_of
exonPaHa09g16900.1-exon-9-1787993825:44926533..44926616
part_of
exonPaHa09g16900.1-exon-9-1787993825:44926707..44926814
part_of
exonPaHa09g16900.1-exon-9-1787993825:44926931..44926993
part_of
exonPaHa09g16900.1-exon-9-1787993825:44927157..44927324
part_of
exonPaHa09g16900.1-exon-9-1787993825:44929472..44929612
part_of
exonPaHa09g16900.1-exon-9-1787993825:44929696..44929743
part_of
exonPaHa09g16900.1-exon-9-1787993825:44934565..44934810
part_of
exonPaHa09g16900.1-exon-9-1787993825:44934903..44935019
part_of
exonPaHa09g16900.1-exon-9-1787993825:44940202..44940270
part_of
exonPaHa09g16900.1-exon-9-1787993825:44940720..44941331
part_of
exonPaHa09g16900.1-exon-9-1787993825:44941667..44942236
part_of
exonPaHa09g16900.1-exon-9-1787993825:44942394..44942474
part_of
exonPaHa09g16900.1-exon-9-1787993825:44943716..44943890
part_of
exonPaHa09g16900.1-exon-9-1787993825:44945965..44946133
part_of
exonPaHa09g16900.1-exon-9-1787993825:44946391..44946502
part_of
exonPaHa09g16900.1-exon-9-1787993825:44946604..44946696
part_of
exonPaHa09g16900.1-exon-9-1787993825:44956806..44956965
part_of
exonPaHa09g16900.1-exon-9-1787993825:44964212..44964426
part_of