Hass · mRNA

PaHa_c256g00100.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,062
bp
unplaced_contig_256:16,971–18,297
genomic location
Record overview

Feature identity

Identifier
PaHa_c256g00100.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,062 bp
Genomic location
unplaced_contig_256:16,971–18,297
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ppk23 | Seed ortholog: 1974281.A0A1V8VA20 | eggNOG OG: Pkinase|J61ES6@2759
Gene Ontology
GO:0002230 positive regulation of defense response to virus by host; GO:0004693 cyclin-dependent protein serine/threonine kinase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005700 polytene chromosome; GO:0005703 polytene chromosome puff; GO:0006351 DNA-templated transcription; GO:0006368 transcription elongation by RNA polymerase II; GO:0008024 cyclin/CDK positive transcription elongation factor complex; GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity; GO:0008380 RNA splicing; GO:0009408 response to heat; GO:0016607 nuclear speck; GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex; GO:0032783 super elongation complex; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0034243 regulation of transcription elongation by RNA polymerase II; GO:0043405 regulation of MAP kinase activity; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0070691 P-TEFb complex
KEGG
EC: ec:2.7.11.22 | KO: K08818 | Pathway: 03250 | BRITE: 00001, 01000, 01001, 03041
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c256g00100.1-CDS-unplaced_contig_256-1787993825:16971..17258
part_of
CDSPaHa_c256g00100.1-CDS-unplaced_contig_256-1787993825:17420..17547
part_of
CDSPaHa_c256g00100.1-CDS-unplaced_contig_256-1787993825:17652..18297
part_of
exonPaHa_c256g00100.1-exon-unplaced_contig_256-1787993825:16971..17258
part_of
exonPaHa_c256g00100.1-exon-unplaced_contig_256-1787993825:17420..17547
part_of
exonPaHa_c256g00100.1-exon-unplaced_contig_256-1787993825:17652..18297
part_of