Hass · mRNA

PaHa03g03180.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,093
bp
3:6,691,572–6,711,516
genomic location
Record overview

Feature identity

Identifier
PaHa03g03180.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,093 bp
Genomic location
3:6,691,572–6,711,516
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104233100 | Seed ortholog: 337451.A0A3S3M1N4 | COG: S | eggNOG OG: MIF4G@131567|A-1*, MIF4G@2759|Od-17, MIF4G@3398|ASk-27
Gene Ontology
GO:0001671 ATPase activator activity; GO:0002183 cytoplasmic translational initiation; GO:0003676 nucleic acid binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003743 translation initiation factor activity; GO:0005198 structural molecule activity; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0006139 nucleobase-containing compound metabolic process; GO:0006412 translation; GO:0006413 translational initiation; GO:0006446 regulation of translational initiation; GO:0007498 mesoderm development; GO:0007507 heart development; GO:0008135 translation factor activity, RNA binding; GO:0008150 biological_process; GO:0009615 response to virus; GO:0010507 negative regulation of autophagy; GO:0010608 post-transcriptional regulation of gene expression; GO:0016070 RNA metabolic process; GO:0022416 chaeta development; GO:0030307 positive regulation of cell growth; GO:0031369 translation initiation factor binding; GO:0034063 cytoplasmic stress granule assembly; GO:0042149 cellular response to glucose starvation; GO:0042273 ribosomal large subunit biogenesis; GO:0045727 positive regulation of translation; GO:0045773 positive regulation of axon extension; GO:0051246 regulation of protein metabolic process; GO:0055086 nucleobase-containing small molecule metabolic process; GO:0060999 positive regulation of dendritic spine development; GO:0140693 molecular condensate scaffold activity; GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response; GO:1901195 positive regulation of formation of translation preinitiation complex
KEGG
KO: K03260 | Pathway: 05416 | BRITE: 00001, 03012, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g03180.1-CDS-3-1787993825:6691572..6691905
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6696181..6696281
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6696864..6696961
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6697452..6697539
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6697646..6697996
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6698650..6698892
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6699296..6699361
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6700361..6700432
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6701210..6701307
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6702552..6702639
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6702754..6703104
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6703646..6703888
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6704125..6704256
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6706640..6706737
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6707680..6707767
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6707869..6708219
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6708848..6709087
part_of
CDSPaHa03g03180.1-CDS-3-1787993825:6711466..6711516
part_of
exonPaHa03g03180.1-exon-3-1787993825:6691572..6691905
part_of
exonPaHa03g03180.1-exon-3-1787993825:6696181..6696281
part_of
exonPaHa03g03180.1-exon-3-1787993825:6696864..6696961
part_of
exonPaHa03g03180.1-exon-3-1787993825:6697452..6697539
part_of
exonPaHa03g03180.1-exon-3-1787993825:6697646..6697996
part_of
exonPaHa03g03180.1-exon-3-1787993825:6698650..6698892
part_of
exonPaHa03g03180.1-exon-3-1787993825:6699296..6699361
part_of
exonPaHa03g03180.1-exon-3-1787993825:6700361..6700432
part_of
exonPaHa03g03180.1-exon-3-1787993825:6701210..6701307
part_of
exonPaHa03g03180.1-exon-3-1787993825:6702552..6702639
part_of
exonPaHa03g03180.1-exon-3-1787993825:6702754..6703104
part_of
exonPaHa03g03180.1-exon-3-1787993825:6703646..6703888
part_of
exonPaHa03g03180.1-exon-3-1787993825:6704125..6704256
part_of
exonPaHa03g03180.1-exon-3-1787993825:6706640..6706737
part_of
exonPaHa03g03180.1-exon-3-1787993825:6707680..6707767
part_of
exonPaHa03g03180.1-exon-3-1787993825:6707869..6708219
part_of
exonPaHa03g03180.1-exon-3-1787993825:6708848..6709087
part_of
exonPaHa03g03180.1-exon-3-1787993825:6711466..6711516
part_of